"autocheck autochk *" looks fine, check the same exists in the equivalent HKLM\SYSTEM\ControlSet00x\Control\Session Manager entries.
I said that there are a lot of entries, what exactly is it about???, but only the one related to autocheck etc.
CurrentControlSet = the Boot type you're currently running under, the other sets relate to alternate Boot types, Safe Mode, Safe Mode with networking, etc. is my understanding.
Does "autocheck autochk *" appear for
all of the alternate HKLM\SYSTEM\ControlSet00
x\Control\Session Manager entries for BootExecute?