When I ran it on my Win 10 to check it out and it took out the updates, I found that restoring with the auto registry backup reinstated Windows Update, but that wouldn't have fixed the problem(s) why WR was run in the first place.
However, thanks for posting your solution as having reinstalled those two services may help to resolve it in the repair program.
One of the repairs is to repair services damaged by infection - not sure if this is where the problem occurs, so I'll run the program again with that repair unchecked to see if it still takes out Windows Update.
I'll see if reinstalling those services will fix the mmc.exe problem it also causes on mine which the registry restore doesn't fix.
EDIT - My error - the repair is to remove policies set by infections and not anything to do with services, so I haven't run the program again.