Just to be clear, I solved the issue myself. This is just a bug report so the developers can figure out what's causing the problem and prevent it from happening.
Unfortunately I can't help explain why it's happening. The log file for your program clearly says that it's registering those 2 files, but I guess it's not taking? I have no idea, I just know that I can reliably reproduce and solve the issue using the steps above.
Anyway, I attached the log file in case it helps.