What other problems do you have that you needed to run the program ?
Can you go Start - type cmd - right click on cmd and select Run as administrator - accept the UAC and enter chkdsk /r
You will be prompted to enter y for it to run on the next restart.
Enter shutdown /r /t 00 to effect an immediate reboot and wait for it to do its thing.
You can view its full log in Event Viewer by going Start - type eventvwr and press enter.
When it has read the data, expand Windows Logs - click on Application - Action - Find then type chkdsk or wininit into the Find box and press enter.
Cancel the Find box and read the log in the scrollable window.
Other than what repairs it may have made, check to see if it reports any KBs in bad sectors.